PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_20465_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 196aa    MW: 22037 Da    PI: 9.6775
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_20465_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-20555155
                                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                         ++++GVr+++ +g+Wv+eIr+p        +r++lg+f+taeeAa+a+++a+  + g
  cra_locus_20465_iso_1_len_755_ver_3  5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFDTAEEAARAYDQAAILMSG 55
                                         59*******9.**********8.....334*********************987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.59E-36565No hitNo description
SMARTSM003802.1E-40669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-33664IPR001471AP2/ERF domain
PfamPF008478.8E-13653IPR001471AP2/ERF domain
PROSITE profilePS5103222.01663IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-21664IPR016177DNA-binding domain
PRINTSPR003678.5E-11718IPR001471AP2/ERF domain
PRINTSPR003678.5E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVQKKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFDTAE EAARAYDQAA ILMSGRNAKT  60
NFPVTQTSND VVPKTTNQSS SSSKDIHQLS EILHAKLKKS SKAPSPSLTC LRLDIENSHI  120
GVWQKRAGPS SDSNWVMTVE LHKNNNNGGD GALDSPTSPM SMESERLRSE MEEEQRIALQ  180
MIEELLNINS ITVCPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-17564161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594389.11e-93PREDICTED: ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI331e-73WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A0D2UDZ25e-90A0A0D2UDZ2_G
TrEMBLA0A068UQ175e-90A0A068UQ17_COFCA; Uncharacterized protein
STRINGPOPTR_0018s13130.14e-89(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476